Open-source tools for the neuroimaging and statistics community. All code is freely available – use it, cite it, contribute to it.
M/EEG Analysis
LIMO MEEG Active
LInear MOdelling for M/EEG data
MATLAB toolbox running on top of EEGLAB and FieldTrip for mass-univariate statistical modelling of M/EEG data. Supports hierarchical GLMs, robust estimation, bootstrapping, and multiple comparisons correction across the full sensor space and time domain.
Tags: MATLAB, EEGLAB, FieldTrip, Statistics, M/EEG
Links: GitHub . Documentation . EEGLAB
BIDS-MATLAB Tools Active
EEGLAB BIDS import / export
EEGLAB plugin for importing and exporting EEG data in BIDS format. Enables fully reproducible EEG pipelines from raw data organisation to group-level analysis, with support for BIDS metadata and provenance.
Tags: MATLAB, EEGLAB, BIDS, EEG
Links: GitHub . Video tutorials
BIDS EEG Derivatives (BEP021) Standard
BIDS extension for electrophysiology derivatives
Co-leading the BIDS Enhancement Proposal for storing and sharing EEG pre-processing and analysis derivatives. Defines a community standard for derivative file naming, folder structure, and metadata.
Tags: BIDS, EEG, Standard
Links: GitHub . Get involved
fMRI Analysis
SPMup Active
SPM Utility Plus
MATLAB library extending SPM for fMRI quality assurance, data boosting, and adaptive thresholding. Provides additional diagnostic plots, robust GLM options, and utilities to get more out of standard SPM analyses.
Tags: MATLAB, SPM, fMRI, QA
Links: GitHub
Infrastructure & Standards
OpenNeuroPET Active
Open PET neuroimaging – BIDS, tools and pipelines
International collaboration to standardise PET neuroimaging data using BIDS, develop open analysis pipelines, and facilitate PET data sharing. Includes BIDS-PET specification work, conversion tools, and a public dataset repository.
Tags: Python, PET, BIDS, Data sharing
Links: Website . GitHub
PublicnEUro Platform
EU platform for open neuroimaging data
European platform for sharing and accessing brain imaging data, developed within an EU consortium. Provides curated datasets, federated access, and infrastructure for large-scale collaborative neuroimaging research.
Tags: Data sharing, BIDS, EU, Platform
Links: Website . GitHub
Open Brain Consent Standard
GDPR-compliant consent templates for open neuroimaging
Community resource providing ready-to-use informed consent templates that comply with GDPR and allow participants’ data to be shared openly. Maintained by an international group; available in multiple languages.
Tags: Open science, GDPR, Ethics
Links: Documentation . GitHub
All repositories, issues, and contribution guidelines are on GitHub.
Interested in collaborating on any of these projects? Get in touch.