Open-source tools for the neuroimaging and statistics community. All code is freely available – use it, cite it, contribute to it.
M/EEG Analysis
LIMO MEEG Active
LInear MOdelling for M/EEG data
MATLAB toolbox running on top of EEGLAB and FieldTrip for mass-univariate statistical modelling of M/EEG data. Supports hierarchical GLMs, robust estimation, bootstrapping, and multiple comparisons correction across the full sensor space and time domain.
Tags: MATLAB, EEGLAB, FieldTrip, Statistics, M/EEG Links: GitHub . Documentation . EEGLAB
EEG-BIDS Active
EEGLAB BIDS import / export
EEGLAB plugin for importing and exporting EEG data in BIDS format. Enables fully reproducible EEG pipelines from raw data organisation to group-level analysis, with support for BIDS metadata and provenance.
Tags: MATLAB, EEGLAB, BIDS, EEG Links: GitHub . Video tutorials
fMRI Analysis
SPMup Active
SPM Utility Plus
MATLAB library extending SPM for fMRI quality assurance, data boosting, and adaptive thresholding. Provides additional diagnostic plots, robust GLM options, and utilities to get more out of standard SPM analyses.
Tags: MATLAB, SPM, fMRI, QA Links: GitHub
Mixture model for single-subject fMRI thresholding
Gorgolewski, K. et al. (2012). Frontiers in Human Neuroscience. doi · Code
BOLD signal decomposition: correcting HRF parameter estimates and computing percentage signal change Pernet, C. R. (2014). Frontiers in Neuroscience. doi · Code
Infrastructure & Standards
OpenNeuroPET Active
Open PET neuroimaging – BIDS, tools and pipelines
International collaboration to standardise PET neuroimaging data using BIDS, develop open analysis pipelines, and facilitate PET data sharing. Includes BIDS-PET specification work, conversion tools, and a public dataset repository.
Tags: Python, PET, BIDS, Data sharing Links: Website . GitHub
PublicnEUro Platform
EU platform for open neuroimaging data
European platform for sharing and accessing brain imaging data, developed within an EU consortium. Provides curated datasets, federated access, and infrastructure for large-scale collaborative neuroimaging research.
Tags: Data sharing, BIDS, EU, Platform Links: Website . GitHub
Open Brain Consent Standard
GDPR-compliant consent templates for open neuroimaging
Community resource providing ready-to-use informed consent templates that comply with GDPR and allow participants’ data to be shared openly. Maintained by an international group; available in multiple languages.
Tags: Open science, GDPR, Ethics Links: Documentation . GitHub
All repositories, issues, and contribution guidelines are on GitHub. Interested in collaborating on any of these projects? Get in touch.